"""Module contains logic for indexing documents into vector stores."""
from __future__ import annotations
import hashlib
import json
import uuid
from itertools import islice
from typing import (
Any,
AsyncIterable,
AsyncIterator,
Callable,
Dict,
Iterable,
Iterator,
List,
Literal,
Optional,
Sequence,
Set,
TypedDict,
TypeVar,
Union,
cast,
)
from langchain_core.document_loaders.base import BaseLoader
from langchain_core.documents import Document
from langchain_core.indexing.base import DocumentIndex, RecordManager
from langchain_core.pydantic_v1 import root_validator
from langchain_core.vectorstores import VectorStore
# Magic UUID to use as a namespace for hashing.
# Used to try and generate a unique UUID for each document
# from hashing the document content and metadata.
NAMESPACE_UUID = uuid.UUID(int=1984)
T = TypeVar("T")
def _hash_string_to_uuid(input_string: str) -> uuid.UUID:
"""Hashes a string and returns the corresponding UUID."""
hash_value = hashlib.sha1(input_string.encode("utf-8")).hexdigest()
return uuid.uuid5(NAMESPACE_UUID, hash_value)
def _hash_nested_dict_to_uuid(data: dict[Any, Any]) -> uuid.UUID:
"""Hashes a nested dictionary and returns the corresponding UUID."""
serialized_data = json.dumps(data, sort_keys=True)
hash_value = hashlib.sha1(serialized_data.encode("utf-8")).hexdigest()
return uuid.uuid5(NAMESPACE_UUID, hash_value)
class _HashedDocument(Document):
"""A hashed document with a unique ID."""
uid: str
hash_: str
"""The hash of the document including content and metadata."""
content_hash: str
"""The hash of the document content."""
metadata_hash: str
"""The hash of the document metadata."""
@classmethod
def is_lc_serializable(cls) -> bool:
return False
@root_validator(pre=True)
def calculate_hashes(cls, values: Dict[str, Any]) -> Dict[str, Any]:
"""Root validator to calculate content and metadata hash."""
content = values.get("page_content", "")
metadata = values.get("metadata", {})
forbidden_keys = ("hash_", "content_hash", "metadata_hash")
for key in forbidden_keys:
if key in metadata:
raise ValueError(
f"Metadata cannot contain key {key} as it "
f"is reserved for internal use."
)
content_hash = str(_hash_string_to_uuid(content))
try:
metadata_hash = str(_hash_nested_dict_to_uuid(metadata))
except Exception as e:
raise ValueError(
f"Failed to hash metadata: {e}. "
f"Please use a dict that can be serialized using json."
) from e
values["content_hash"] = content_hash
values["metadata_hash"] = metadata_hash
values["hash_"] = str(_hash_string_to_uuid(content_hash + metadata_hash))
_uid = values.get("uid", None)
if _uid is None:
values["uid"] = values["hash_"]
return values
def to_document(self) -> Document:
"""Return a Document object."""
return Document(
id=self.uid,
page_content=self.page_content,
metadata=self.metadata,
)
@classmethod
def from_document(
cls, document: Document, *, uid: Optional[str] = None
) -> _HashedDocument:
"""Create a HashedDocument from a Document."""
return cls( # type: ignore[call-arg]
uid=uid, # type: ignore[arg-type]
page_content=document.page_content,
metadata=document.metadata,
)
def _batch(size: int, iterable: Iterable[T]) -> Iterator[List[T]]:
"""Utility batching function."""
it = iter(iterable)
while True:
chunk = list(islice(it, size))
if not chunk:
return
yield chunk
async def _abatch(size: int, iterable: AsyncIterable[T]) -> AsyncIterator[List[T]]:
"""Utility batching function."""
batch: List[T] = []
async for element in iterable:
if len(batch) < size:
batch.append(element)
if len(batch) >= size:
yield batch
batch = []
if batch:
yield batch
def _get_source_id_assigner(
source_id_key: Union[str, Callable[[Document], str], None],
) -> Callable[[Document], Union[str, None]]:
"""Get the source id from the document."""
if source_id_key is None:
return lambda doc: None
elif isinstance(source_id_key, str):
return lambda doc: doc.metadata[source_id_key]
elif callable(source_id_key):
return source_id_key
else:
raise ValueError(
f"source_id_key should be either None, a string or a callable. "
f"Got {source_id_key} of type {type(source_id_key)}."
)
def _deduplicate_in_order(
hashed_documents: Iterable[_HashedDocument],
) -> Iterator[_HashedDocument]:
"""Deduplicate a list of hashed documents while preserving order."""
seen: Set[str] = set()
for hashed_doc in hashed_documents:
if hashed_doc.hash_ not in seen:
seen.add(hashed_doc.hash_)
yield hashed_doc
# PUBLIC API
[docs]class IndexingResult(TypedDict):
"""Return a detailed a breakdown of the result of the indexing operation."""
num_added: int
"""Number of added documents."""
num_updated: int
"""Number of updated documents because they were not up to date."""
num_deleted: int
"""Number of deleted documents."""
num_skipped: int
"""Number of skipped documents because they were already up to date."""
[docs]def index(
docs_source: Union[BaseLoader, Iterable[Document]],
record_manager: RecordManager,
vector_store: Union[VectorStore, DocumentIndex],
*,
batch_size: int = 100,
cleanup: Literal["incremental", "full", None] = None,
source_id_key: Union[str, Callable[[Document], str], None] = None,
cleanup_batch_size: int = 1_000,
force_update: bool = False,
) -> IndexingResult:
"""Index data from the loader into the vector store.
Indexing functionality uses a manager to keep track of which documents
are in the vector store.
This allows us to keep track of which documents were updated, and which
documents were deleted, which documents should be skipped.
For the time being, documents are indexed using their hashes, and users
are not able to specify the uid of the document.
IMPORTANT:
* if auto_cleanup is set to True, the loader should be returning
the entire dataset, and not just a subset of the dataset.
Otherwise, the auto_cleanup will remove documents that it is not
supposed to.
* In incremental mode, if documents associated with a particular
source id appear across different batches, the indexing API
will do some redundant work. This will still result in the
correct end state of the index, but will unfortunately not be
100% efficient. For example, if a given document is split into 15
chunks, and we index them using a batch size of 5, we'll have 3 batches
all with the same source id. In general, to avoid doing too much
redundant work select as big a batch size as possible.
Args:
docs_source: Data loader or iterable of documents to index.
record_manager: Timestamped set to keep track of which documents were
updated.
vector_store: VectorStore or DocumentIndex to index the documents into.
batch_size: Batch size to use when indexing. Default is 100.
cleanup: How to handle clean up of documents. Default is None.
- Incremental: Cleans up all documents that haven't been updated AND
that are associated with source ids that were seen
during indexing.
Clean up is done continuously during indexing helping
to minimize the probability of users seeing duplicated
content.
- Full: Delete all documents that have not been returned by the loader
during this run of indexing.
Clean up runs after all documents have been indexed.
This means that users may see duplicated content during indexing.
- None: Do not delete any documents.
source_id_key: Optional key that helps identify the original source
of the document. Default is None.
cleanup_batch_size: Batch size to use when cleaning up documents.
Default is 1_000.
force_update: Force update documents even if they are present in the
record manager. Useful if you are re-indexing with updated embeddings.
Default is False.
Returns:
Indexing result which contains information about how many documents
were added, updated, deleted, or skipped.
Raises:
ValueError: If cleanup mode is not one of 'incremental', 'full' or None
ValueError: If cleanup mode is incremental and source_id_key is None.
ValueError: If vectorstore does not have
"delete" and "add_documents" required methods.
ValueError: If source_id_key is not None, but is not a string or callable.
"""
if cleanup not in {"incremental", "full", None}:
raise ValueError(
f"cleanup should be one of 'incremental', 'full' or None. "
f"Got {cleanup}."
)
if cleanup == "incremental" and source_id_key is None:
raise ValueError("Source id key is required when cleanup mode is incremental.")
destination = vector_store # Renaming internally for clarity
# If it's a vectorstore, let's check if it has the required methods.
if isinstance(destination, VectorStore):
# Check that the Vectorstore has required methods implemented
methods = ["delete", "add_documents"]
for method in methods:
if not hasattr(destination, method):
raise ValueError(
f"Vectorstore {destination} does not have required method {method}"
)
if type(destination).delete == VectorStore.delete:
# Checking if the vectorstore has overridden the default delete method
# implementation which just raises a NotImplementedError
raise ValueError("Vectorstore has not implemented the delete method")
elif isinstance(destination, DocumentIndex):
pass
else:
raise TypeError(
f"Vectorstore should be either a VectorStore or a DocumentIndex. "
f"Got {type(destination)}."
)
if isinstance(docs_source, BaseLoader):
try:
doc_iterator = docs_source.lazy_load()
except NotImplementedError:
doc_iterator = iter(docs_source.load())
else:
doc_iterator = iter(docs_source)
source_id_assigner = _get_source_id_assigner(source_id_key)
# Mark when the update started.
index_start_dt = record_manager.get_time()
num_added = 0
num_skipped = 0
num_updated = 0
num_deleted = 0
for doc_batch in _batch(batch_size, doc_iterator):
hashed_docs = list(
_deduplicate_in_order(
[_HashedDocument.from_document(doc) for doc in doc_batch]
)
)
source_ids: Sequence[Optional[str]] = [
source_id_assigner(doc) for doc in hashed_docs
]
if cleanup == "incremental":
# If the cleanup mode is incremental, source ids are required.
for source_id, hashed_doc in zip(source_ids, hashed_docs):
if source_id is None:
raise ValueError(
"Source ids are required when cleanup mode is incremental. "
f"Document that starts with "
f"content: {hashed_doc.page_content[:100]} was not assigned "
f"as source id."
)
# source ids cannot be None after for loop above.
source_ids = cast(Sequence[str], source_ids) # type: ignore[assignment]
exists_batch = record_manager.exists([doc.uid for doc in hashed_docs])
# Filter out documents that already exist in the record store.
uids = []
docs_to_index = []
uids_to_refresh = []
seen_docs: Set[str] = set()
for hashed_doc, doc_exists in zip(hashed_docs, exists_batch):
if doc_exists:
if force_update:
seen_docs.add(hashed_doc.uid)
else:
uids_to_refresh.append(hashed_doc.uid)
continue
uids.append(hashed_doc.uid)
docs_to_index.append(hashed_doc.to_document())
# Update refresh timestamp
if uids_to_refresh:
record_manager.update(uids_to_refresh, time_at_least=index_start_dt)
num_skipped += len(uids_to_refresh)
# Be pessimistic and assume that all vector store write will fail.
# First write to vector store
if docs_to_index:
if isinstance(destination, VectorStore):
destination.add_documents(
docs_to_index, ids=uids, batch_size=batch_size
)
elif isinstance(destination, DocumentIndex):
destination.upsert(docs_to_index)
num_added += len(docs_to_index) - len(seen_docs)
num_updated += len(seen_docs)
# And only then update the record store.
# Update ALL records, even if they already exist since we want to refresh
# their timestamp.
record_manager.update(
[doc.uid for doc in hashed_docs],
group_ids=source_ids,
time_at_least=index_start_dt,
)
# If source IDs are provided, we can do the deletion incrementally!
if cleanup == "incremental":
# Get the uids of the documents that were not returned by the loader.
# mypy isn't good enough to determine that source ids cannot be None
# here due to a check that's happening above, so we check again.
for source_id in source_ids:
if source_id is None:
raise AssertionError("Source ids cannot be None here.")
_source_ids = cast(Sequence[str], source_ids)
uids_to_delete = record_manager.list_keys(
group_ids=_source_ids, before=index_start_dt
)
if uids_to_delete:
# Then delete from vector store.
destination.delete(uids_to_delete)
# First delete from record store.
record_manager.delete_keys(uids_to_delete)
num_deleted += len(uids_to_delete)
if cleanup == "full":
while uids_to_delete := record_manager.list_keys(
before=index_start_dt, limit=cleanup_batch_size
):
# First delete from record store.
destination.delete(uids_to_delete)
# Then delete from record manager.
record_manager.delete_keys(uids_to_delete)
num_deleted += len(uids_to_delete)
return {
"num_added": num_added,
"num_updated": num_updated,
"num_skipped": num_skipped,
"num_deleted": num_deleted,
}
# Define an asynchronous generator function
async def _to_async_iterator(iterator: Iterable[T]) -> AsyncIterator[T]:
"""Convert an iterable to an async iterator."""
for item in iterator:
yield item
[docs]async def aindex(
docs_source: Union[BaseLoader, Iterable[Document], AsyncIterator[Document]],
record_manager: RecordManager,
vector_store: Union[VectorStore, DocumentIndex],
*,
batch_size: int = 100,
cleanup: Literal["incremental", "full", None] = None,
source_id_key: Union[str, Callable[[Document], str], None] = None,
cleanup_batch_size: int = 1_000,
force_update: bool = False,
) -> IndexingResult:
"""Async index data from the loader into the vector store.
Indexing functionality uses a manager to keep track of which documents
are in the vector store.
This allows us to keep track of which documents were updated, and which
documents were deleted, which documents should be skipped.
For the time being, documents are indexed using their hashes, and users
are not able to specify the uid of the document.
IMPORTANT:
if auto_cleanup is set to True, the loader should be returning
the entire dataset, and not just a subset of the dataset.
Otherwise, the auto_cleanup will remove documents that it is not
supposed to.
Args:
docs_source: Data loader or iterable of documents to index.
record_manager: Timestamped set to keep track of which documents were
updated.
vectorstore: Vector store or Document Index to index the documents into
batch_size: Batch size to use when indexing. Default is 100.
cleanup: How to handle clean up of documents. Default is None.
- Incremental: Cleans up all documents that haven't been updated AND
that are associated with source ids that were seen
during indexing.
Clean up is done continuously during indexing helping
to minimize the probability of users seeing duplicated
content.
- Full: Delete all documents that haven to been returned by the loader.
Clean up runs after all documents have been indexed.
This means that users may see duplicated content during indexing.
- None: Do not delete any documents.
source_id_key: Optional key that helps identify the original source
of the document. Default is None.
cleanup_batch_size: Batch size to use when cleaning up documents.
Default is 1_000.
force_update: Force update documents even if they are present in the
record manager. Useful if you are re-indexing with updated embeddings.
Default is False.
Returns:
Indexing result which contains information about how many documents
were added, updated, deleted, or skipped.
Raises:
ValueError: If cleanup mode is not one of 'incremental', 'full' or None
ValueError: If cleanup mode is incremental and source_id_key is None.
ValueError: If vectorstore does not have
"adelete" and "aadd_documents" required methods.
ValueError: If source_id_key is not None, but is not a string or callable.
"""
if cleanup not in {"incremental", "full", None}:
raise ValueError(
f"cleanup should be one of 'incremental', 'full' or None. "
f"Got {cleanup}."
)
if cleanup == "incremental" and source_id_key is None:
raise ValueError("Source id key is required when cleanup mode is incremental.")
destination = vector_store # Renaming internally for clarity
# If it's a vectorstore, let's check if it has the required methods.
if isinstance(destination, VectorStore):
# Check that the Vectorstore has required methods implemented
# Check that the Vectorstore has required methods implemented
methods = ["adelete", "aadd_documents"]
for method in methods:
if not hasattr(destination, method):
raise ValueError(
f"Vectorstore {destination} does not have required method {method}"
)
if type(destination).adelete == VectorStore.adelete:
# Checking if the vectorstore has overridden the default delete method
# implementation which just raises a NotImplementedError
raise ValueError("Vectorstore has not implemented the delete method")
elif isinstance(destination, DocumentIndex):
pass
else:
raise TypeError(
f"Vectorstore should be either a VectorStore or a DocumentIndex. "
f"Got {type(destination)}."
)
async_doc_iterator: AsyncIterator[Document]
if isinstance(docs_source, BaseLoader):
try:
async_doc_iterator = docs_source.alazy_load()
except NotImplementedError:
# Exception triggered when neither lazy_load nor alazy_load are implemented.
# * The default implementation of alazy_load uses lazy_load.
# * The default implementation of lazy_load raises NotImplementedError.
# In such a case, we use the load method and convert it to an async
# iterator.
async_doc_iterator = _to_async_iterator(docs_source.load())
else:
if hasattr(docs_source, "__aiter__"):
async_doc_iterator = docs_source # type: ignore[assignment]
else:
async_doc_iterator = _to_async_iterator(docs_source)
source_id_assigner = _get_source_id_assigner(source_id_key)
# Mark when the update started.
index_start_dt = await record_manager.aget_time()
num_added = 0
num_skipped = 0
num_updated = 0
num_deleted = 0
async for doc_batch in _abatch(batch_size, async_doc_iterator):
hashed_docs = list(
_deduplicate_in_order(
[_HashedDocument.from_document(doc) for doc in doc_batch]
)
)
source_ids: Sequence[Optional[str]] = [
source_id_assigner(doc) for doc in hashed_docs
]
if cleanup == "incremental":
# If the cleanup mode is incremental, source ids are required.
for source_id, hashed_doc in zip(source_ids, hashed_docs):
if source_id is None:
raise ValueError(
"Source ids are required when cleanup mode is incremental. "
f"Document that starts with "
f"content: {hashed_doc.page_content[:100]} was not assigned "
f"as source id."
)
# source ids cannot be None after for loop above.
source_ids = cast(Sequence[str], source_ids)
exists_batch = await record_manager.aexists([doc.uid for doc in hashed_docs])
# Filter out documents that already exist in the record store.
uids: list[str] = []
docs_to_index: list[Document] = []
uids_to_refresh = []
seen_docs: Set[str] = set()
for hashed_doc, doc_exists in zip(hashed_docs, exists_batch):
if doc_exists:
if force_update:
seen_docs.add(hashed_doc.uid)
else:
uids_to_refresh.append(hashed_doc.uid)
continue
uids.append(hashed_doc.uid)
docs_to_index.append(hashed_doc.to_document())
if uids_to_refresh:
# Must be updated to refresh timestamp.
await record_manager.aupdate(uids_to_refresh, time_at_least=index_start_dt)
num_skipped += len(uids_to_refresh)
# Be pessimistic and assume that all vector store write will fail.
# First write to vector store
if docs_to_index:
if isinstance(destination, VectorStore):
await destination.aadd_documents(
docs_to_index, ids=uids, batch_size=batch_size
)
elif isinstance(destination, DocumentIndex):
await destination.aupsert(docs_to_index)
num_added += len(docs_to_index) - len(seen_docs)
num_updated += len(seen_docs)
# And only then update the record store.
# Update ALL records, even if they already exist since we want to refresh
# their timestamp.
await record_manager.aupdate(
[doc.uid for doc in hashed_docs],
group_ids=source_ids,
time_at_least=index_start_dt,
)
# If source IDs are provided, we can do the deletion incrementally!
if cleanup == "incremental":
# Get the uids of the documents that were not returned by the loader.
# mypy isn't good enough to determine that source ids cannot be None
# here due to a check that's happening above, so we check again.
for source_id in source_ids:
if source_id is None:
raise AssertionError("Source ids cannot be None here.")
_source_ids = cast(Sequence[str], source_ids)
uids_to_delete = await record_manager.alist_keys(
group_ids=_source_ids, before=index_start_dt
)
if uids_to_delete:
# Then delete from vector store.
await destination.adelete(uids_to_delete)
# First delete from record store.
await record_manager.adelete_keys(uids_to_delete)
num_deleted += len(uids_to_delete)
if cleanup == "full":
while uids_to_delete := await record_manager.alist_keys(
before=index_start_dt, limit=cleanup_batch_size
):
# First delete from record store.
await destination.adelete(uids_to_delete)
# Then delete from record manager.
await record_manager.adelete_keys(uids_to_delete)
num_deleted += len(uids_to_delete)
return {
"num_added": num_added,
"num_updated": num_updated,
"num_skipped": num_skipped,
"num_deleted": num_deleted,
}
